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In Press
J. S. Koning, Subramanian, A., Alotaibi, M., Appel, C. L., Sullivan, C. M., Chao, T., Truong, L., Tanguay, R. L., Jaiswal, P., Levi, T., and Lesmeister, D. B., “Njobvu-AI: An open-source tool for collaborative image labeling and implementation of computer vision models”, arXiv, In Press.
2024
J. V. Lam, Lopez, R. L., Truong, L., and Tanguay, R. L., “The addition of mammalian cell culture medium impacts nanoparticle toxicity in zebrafish.”, Toxicol Rep, vol. 12, pp. 422-429, 2024.
C. I. Rude, Wilson, L. B., La Du, J., Lalli, P. M., Colby, S. M., Schultz, K. J., Smith, J. N., Waters, K. M., and Tanguay, R. L., “AHR Dependent Toxicity by Retene Requires Metabolic Competence.”, Toxicol Sci, 2024.
R. M. Valdez, Rivera, B. N., Chang, Y., Pennington, J. M., Fischer, K. A., Löhr, C. V., and Tilton, S. C., “Assessing susceptibility for polycyclic aromatic hydrocarbon toxicity in an 3D respiratory model for asthma.”, Front Toxicol, vol. 6, p. 1287863, 2024.
K. E. O'Malley, Ghetu, C. C., Rohlman, D., and Anderson, K. A., “Assessing Wildfire Impact on Diffusive Flux of Parent and Alkylated PAHs: A Pilot Study of Soil-Air Chemical Movement before, during, and after Wildfires.”, Environ Sci Technol, 2024.
P. Sharma, Wong, C. P., Ho, E., and Sampath, H., “Catalytic activity of OGG1 is impaired by Zinc deficiency.”, DNA Repair (Amst), vol. 134, p. 103628, 2024.
A. J. Green, Truong, L., Thunga, P., Leong, C., Hancock, M., Tanguay, R. L., and Reif, D. M., “Deep autoencoder-based behavioral pattern recognition outperforms standard statistical methods in high-dimensional zebrafish studies.”, PLoS Comput Biol, vol. 20, no. 9, p. e1012423, 2024.
K. W. Riley, Burke, K., Dixon, H., Holmes, D., Calero, L., Barton, M., Miller, R. L., Bramer, L. M., Waters, K. M., Anderson, K. A., Herbstman, J., and Rohlman, D., “Development and Outcomes of Returning Polycyclic Aromatic Hydrocarbon Exposure Results in the Washington Heights, NYC Community.”, Environ Health Insights, vol. 18, p. 11786302241262604, 2024.
S. Dasgupta, Simonich, M. T., and Tanguay, R. L., “Developmental Toxicity Assessment Using Zebrafish-Based High-Throughput Screening.”, Methods Mol Biol, vol. 2707, pp. 71-82, 2024.
M. L. Morshead, Truong, L., Simonich, M. T., Moran, J. E., Anderson, K. A., and Tanguay, R. L., “Developmental toxicity of alkylated PAHs and substituted phenanthrenes: Structural nuances drive diverse toxicity and AHR activation.”, Chemosphere, vol. 370, p. 143894, 2024.
Y. Rericha, St Mary, L., Truong, L., McClure, R., J Martin, K., Leonard, S. W., Thunga, P., Simonich, M. T., Waters, K. M., Field, J. A., and Tanguay, R. L., “Diverse PFAS produce unique transcriptomic changes linked to developmental toxicity in zebrafish.”, Front Toxicol, vol. 6, p. 1425537, 2024.
L. St Mary, Trine, L. S. D., Roper, C., Wiley, J., Craciunescu, L., Sotorrios, L., Paterson, M., Simonich, S. L. Massey, McCoustra, M., and Henry, T. B., “Environmental significance of PAH photoproduct formation: TiO nanoparticle influence, altered bioavailability, and potential photochemical mechanisms.”, Chemosphere, vol. 360, p. 142384, 2024.
L. M. Bramer, Dixon, H. M., Degnan, D. J., Rohlman, D., Herbstman, J. B., Anderson, K. A., and Waters, K. M., “Expanding the access of wearable silicone wristbands in community-engaged research through best practices in data analysis and integration.”, Pac Symp Biocomput, vol. 29, pp. 170-186, 2024.
A. J. Annalora, Coburn, J. L., Jozic, A., Iversen, P. L., and Marcus, C. B., “Global transcriptome modulation by xenobiotics: the role of alternative splicing in adaptive responses to chemical exposures.”, Hum Genomics, vol. 18, no. 1, p. 127, 2024.
J. A. Bouranis, Ren, Y., Beaver, L. M., Choi, J., Wong, C. P., He, L., Traber, M. G., Kelly, J., Booth, S. L., Stevens, J. F., Fern, X. Z., and Ho, E., “Identification of biological signatures of cruciferous vegetable consumption utilizing machine learning-based global untargeted stable isotope traced metabolomics.”, Front Nutr, vol. 11, p. 1390223, 2024.
V. C. Colvin, Bramer, L. M., Rivera, B. N., Pennington, J. M., Waters, K. M., and Tilton, S. C., “Modeling PAH Mixture Interactions in a Human In Vitro Organotypic Respiratory Model.”, Int J Mol Sci, vol. 25, no. 8, 2024.
J. M. Huizenga, Schindler, J., Simonich, M. T., Truong, L., García-Jaramillo, M., Tanguay, R. L., and Semprini, L., “PAH bioremediation with Rhodococcus rhodochrous ATCC 21198: Impact of cell immobilization and surfactant use on PAH treatment and post-remediation toxicity.”, J Hazard Mater, vol. 470, p. 134109, 2024.
L. M. Bramer, Dixon, H. M., Rohlman, D., Scott, R. P., Miller, R. L., Kincl, L., Herbstman, J. B., Waters, K. M., and Anderson, K. A., “PM Is Insufficient to Explain Personal PAH Exposure.”, Geohealth, vol. 8, no. 2, p. e2023GH000937, 2024.
S. M. McLarnan, Bramer, L. M., Dixon, H. M., Scott, R. P., Calero, L., Holmes, D., Gibson, E. A., Cavalier, H. M., Rohlman, D., Miller, R. L., Kincl, L., Waters, K. M., Anderson, K. A., and Herbstman, J. B., “Predicting personal PAH exposure using high dimensional questionnaire and wristband data.”, J Expo Sci Environ Epidemiol, 2024.
S. Dasgupta, Goodale, B., and Tanguay, R., “Single cell sequencing of zebrafish kidney marrows reveals AHR2-dependent endogenous regulation of hematopoiesis.”, bioRxiv, 2024.
J. A. Bouranis, Beaver, L. M., Wong, C. P., Choi, J., Hamer, S., Davis, E. W., Brown, K. S., Jiang, D., Sharpton, T. J., Stevens, J. F., and Ho, E., “Sulforaphane and Sulforaphane-Nitrile Metabolism in Humans Following Broccoli Sprout Consumption: Inter-individual Variation, Association with Gut Microbiome Composition, and Differential Bioactivity.”, Mol Nutr Food Res, vol. 68, no. 4, p. e2300286, 2024.
K. Young, Brown, K. Alisa, Daniel, L. Crocker, Duarte, K., and Rohlman, D., “Wildfire Smoke Exposure During Pregnancy: Consensus-Building to Co-Create a Community-Engaged Study.”, Int J Environ Res Public Health, vol. 21, no. 11, 2024.
K. Stagaman, Alexiev, A., Sieler, M. J., Hammer, A., Kasschau, K. D., Truong, L., Tanguay, R. L., and Sharpton, T. J., “The zebrafish gut microbiome influences benzo[a]pyrene developmental neurobehavioral toxicity.”, Sci Rep, vol. 14, no. 1, p. 14618, 2024.
2023
R. S. McClure, Rericha, Y., Waters, K. M., and Tanguay, R. L., “3' RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism.”, Front Bioinform, vol. 3, p. 1234218, 2023.
L. B. Wilson, Moran, I. L., Anderson, K. A., and Tanguay, R. L., “Advances in PAH mixture toxicology enabled by zebrafish.”, Curr Opin Toxicol, vol. 34, 2023.

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